Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0793032.3a.6a with 5 members (protein kinase)

Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata /

... /

Gnathostomata / Euteleostomi / Neopterygii / Teleostei / Clupeocephala / Euteleosteomorpha / Acanthomorphata / Percomorphaceae / Ovalentaria / Cichlidae /

Pseudocrenilabrinae /

Completeness score: 1.00

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This HOG has 37 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0793032.3a.6a	697	163	protein kinase
2	HOG:E0793032.3a	192	443	protein kinase
3	HOG:E0639511.2c	50	13	protein kinase
4	HOG:E0793032.3a.6a.3a	35	7	protein kinase
5	HOG:E0639511	28	39	protein kinase
6	HOG:E0639511.1b	15	3	protein kinase
7	HOG:E0801468.10emn	14	234	domain-containing protein
8	HOG:E0793032.3a.6a.2b	10	2	protein kinase
9	HOG:E0793032.3a.6a.2a	10	2	protein kinase
10	HOG:E0793032.3a.6a.1b	10	2	protein kinase
11	HOG:E0793032.3a.6a.1a	10	2	protein kinase
12	HOG:E0793032.3a.3b	9	2	protein kinase
13	HOG:E0342840	6	8	protein kinase
14	HOG:E0801468.10emn.5480b	5	3	domain-containing protein
15	HOG:E0793032.3a.4a	5	1	protein kinase
16	HOG:E0793032.3a.3a	5	1	protein kinase
17	HOG:E0793032.3a.2b	5	1	protein kinase
18	HOG:E0793032.3a.2a	5	1	protein kinase
19	HOG:E0793032.3a.1b	5	1	protein kinase
20	HOG:E0793032.2b	5	5	protein kinase
21	HOG:E0793032	5	1669	protein kinase
22	HOG:E0639511.2c.2b	5	1	protein kinase
23	HOG:E0639511.2c.2a	5	2	protein kinase
24	HOG:E0639511.2b.1b	5	1	protein kinase
25	HOG:E0801468.10emn.5476c.4298a	4	9	domain-containing protein

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